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agRee - Various Methods for Measuring Agreement

Bland-Altman plot and scatter plot with identity line for visualization and point and interval estimates for different metrics related to reproducibility/repeatability/agreement including the concordance correlation coefficient, intraclass correlation coefficient, within-subject coefficient of variation, smallest detectable difference, and mean normalized smallest detectable difference.

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jagscpp

2.36 score 46 scripts 297 downloads

miscF - Miscellaneous Functions

Various functions for random number generation, density estimation, classification, curve fitting, and spatial data analysis.

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jagscpp

2.28 score 2 dependents 16 scripts 367 downloads

PottsUtils - Utility Functions of the Potts Models

There are three sets of functions. The first produces basic properties of a graph and generates samples from multinomial distributions to facilitate the simulation functions (they maybe used for other purposes as well). The second provides various simulation functions for a Potts model in Potts, R. B. (1952) <doi:10.1017/S0305004100027419>. The third currently includes only one function which computes the normalizing constant of a Potts model based on simulation results.

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jagscpp

2.15 score 14 scripts 608 downloads

auRoc - Various Methods to Estimate the AUC

Estimate the AUC using a variety of methods as follows: (1) frequentist nonparametric methods based on the Mann-Whitney statistic or kernel methods. (2) frequentist parametric methods using the likelihood ratio test based on higher-order asymptotic results, the signed log-likelihood ratio test, the Wald test, or the approximate ''t'' solution to the Behrens-Fisher problem. (3) Bayesian parametric MCMC methods.

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jagscpp

1.00 score 4 scripts 269 downloads